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One Copy and/or "Blank" Spots
  • I have been looking through the genetics testing results of my horses, and I noticed that sometimes only one of the two slots for a gene will have something in it. For example, a horse with a gold cream champagne coat has -/Cr for its cream gene. My question, based on that is this: Does having a blank slot in one of the two positions mean that the gene is expresses as if it were homozygous, or does it need two copies?
    Does E/- have the same effect as E/E and -/E?
    What sort of effect does this have on breeding?
    If this has been addressed elsewhere, my apologies. Just direct me to where I should go.
    Post edited by Treble at 2021-09-11 06:46:53
    Game number 273531
    Licensed for Ice 9, 13, 17, and 18, Shatterglass, Nacre, Paintbrush Cool, Axiom Blue, Chinchilla, and Watercolor
    Breeder of Black Tobiano, Sabino, and Bay Kit M
    Sale Barn: https://www.huntandjump.com/member.php?uid=273531&b_id=38569
  • Hi there Treble! To answer your questions, some genes are dominant and only need one copy to show on a horse’s coat. An E/e and E/E horse can look the same on the outside, but an E/E horse will always pass “E” to its offspring. An E/e horse will only pass “E” 50% of the time. E (black) and A (bay) are genes that dictate a horse’s color. Without any dominant (E) black genes, horses will be a base of red (chestnut/sorrel). The small “e” and “a” signify the horse has a non-dominant copy of black/bay.

    Then there are pigment modifing/ diluting genes, like cream. Over a chestnut base (e/e a/a OR e/e A/a OR e/e A/A), one cream gene will turn a horse palomino, and two copies will make a cremello. Add a copy of champagne to one copy cream and then the horse becomes a gold cream champagne. Because cream and champagne are dominant genes, the horse only needs to have one copy for it to show. Like above, a horse that is heterozygous has a 50% chance of passing these genes to offspring.

    Certain genes, like in-game satin, are recessive and need to be homozygous to show on a horse’s coat. In this situation, a horse could carry a single copy, but there will be no outward signs.

    Hopefully that helps a bit. I’m newer to HaJ, but know a decent amount about genetics outside of this. Still figuring out some aspects of the game though! :)
    Post edited by HappyHorseRanch at 2021-09-11 11:21:28
  • A Cremello can also be homozygous for any of the bay genes, but they won’t be expressed since the horse has no E genes. Bay is a modifier gene that acts on a black base. Bay itself is not a base color. There are only two base colors, black and red/chestnut.

    Also, the only possible combinations for the extension gene are E/E, E/e, e/E, and e/e. There cannot be an empty slot with this gene because every single horse in existence must carry it as it determines the base coat color :)
    Post edited by Nightphoenix at 2021-09-11 09:44:56
    I’m autistic and I struggle with any kind of communication, so I apologize in advance if I say anything rude or offensive because there’s a 99% chance that I have no clue I did it. I appreciate your patience with me!
    Thanked by 2annismyrph Mensie
  • If i remember correctly the "-" means its the default for the gene. So -/- on the cream allele (where the cream (Cr), pearl (Prl), Sun (Sun) and snowdrop (Sno) can be found), the "-" means it is the default or "non-epressant" of the gene. Like the others said, if your horse has -/Cr it is heterozygous for creme genetically and will also show it on its coat color. Similar like the appy gene: -/- means no appaloosa, Lp/- means heterozygous for appaloosa and Lp/Lp means homozygous for appaloosa. The expressions of each gene vary. Like the others said, a heterozygous cream horse (-/Cr) on a chestnut base (ee) will be palomino. If it had homo cream (Cr/Cr) it will look different, being a cremello. So the "-"/ does not mean the gene expresses as it is homozygous. The "-" simply means the horse doss not has any modifiers on that cream allele. Another example is sooty: Sty/Sty means a horse is homozygous for Sooty and has a dark coat. Sty/- means it is heterozygous Sooty and that it has a medium darkened coat. -/- on the sooty allele means your horse has no modifiers, no Sty so no darkening of the coat, so it will have a light colored coat.
    I hope this helped you a bit with figuring out the genetics! :)
    HJ1 160524
    HJ2 136

    Thanked by 3Mensie Ammit Treble
  • Me: reads gene post
    My brain: (calculating but does not understand a word)
    ID # 273464
    - Anaconda Horses, Ponies and Collectibles -
    Licensed for height regulator
  • ok, if you look at a gene line the only genes that show are the ones the horse has X/- means the horse it Het for that gene ( it may or may not be visible in the horses coat depending on what gene it is ; for example if the horse shows PATN1/blank but there is not LP it means he has the pattern but will not express it, the foals have a 50% change of inherting the gene ). X-X means the horse is HOM for the gene ( this means it is visable, the horse will express it and the foals will at least be Het for the gene). Blank/Blank means the horse does NOT have the gene, cannot show it and foals will not inherit it. does that make it more clear for you? if not shoot me a dm and i ll try to explain further :)
    Anni9

    image

  • @annismyrph Yes, that does help clarify matters. I think I had a similar thought rolling around in my mind, but you expressed it so nicely. Thank you.
    Game number 273531
    Licensed for Ice 9, 13, 17, and 18, Shatterglass, Nacre, Paintbrush Cool, Axiom Blue, Chinchilla, and Watercolor
    Breeder of Black Tobiano, Sabino, and Bay Kit M
    Sale Barn: https://www.huntandjump.com/member.php?uid=273531&b_id=38569

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